Mucin Species Protein Sequence Length mRNA Sequence DNA Sequence Note
2a x.tropicalis fasta domain 3305 fasta plain scaffold_183+, ~0.8Mbp Gap in PTS region in genomic sequence. 16 exons in PTS-CysD region. Ensembl reference: version 37.4 GENSCAN00000074980, FGENESH000000118113,  ENSXETP00000040991 and ENSXETP00000040983; version 34.1b GENSCAN00000138106, ENSXETP00000040991, ENSXETP00000040993, and ENSXETP00000040987.
2b x.tropicalis fasta domain 2775 fasta plain scaffold_183-, ~0.9Mbp 3 exons in PTS. Ensembl reference: version 37.4 GENSCAN00000074960+GENSCAN00000075014+GENSCAN00000075009, FGENESH000000117829, ENSXETP00000041010, ENSXETP00000041071, ENSXETP00000041004, ENSXETP00000041073, ENSXETP00000054681, ENSXETP00000041009, ENSXETP00000041008, ENSXETP00000041077 and ENSXETP00000013458; version V34.1b GENSCAN00000138108+GENSCAN00000138107, ENSXETP00000041010, ENSXETP00000041071 and ENSXETP00000041004.
2c x.tropicalis fasta domain 1307 fasta plain scaffold_183+, ~1.3Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000017520+GENSCAN00000017505, ENSXETP00000034563, ENSXETP00000006928, and ENSXETP00000021926; version 34.1b GENSCAN00000113444+GENSCAN00000113445 and ENSXETP00000040983.
2d x.tropicalis fasta domain 1944 fasta plain scaffold_183+, ~1.4Mbp 12 exons in PTS. Each exon encodes one tandem repeat unit. Ensembl reference: version 37.4 GENSCAN00000017563+GENSCAN00000017530, FGENESH000000025745, ENSXETP00000040987, ENSXETP00000034730, ENSXETP00000041157, ENSXETP00000034607, ENSXETP00000006928 and ENSXETP00000021926; version 34.1b GENSCAN00000113448.
2e x.tropicalis fasta domain 1157 fasta plain scaffold_183+, ~1.9Mbp 7 exons in PTS. Each exon encodes one tandem repeat unit. PTS part has Cys-containing sequence. Ensembl reference: version 37.4: GENSCAN00000017512, FGENESH0000000257502, ENSXETP00000054667 and ENSXETP00000032512; version 34.1b: GENSCAN00000113478.
2f x.tropicalis fasta domain 3069 fasta plain scaffold_574+, ~0.1Mbp Gap in PTS region in genomic sequence. 23 exons in PTS. Each exon encodes one tandem repeat unit. PTS part has Cys-containing sequence. Ensembl reference: version 37.4 GENSCAN00000040235+GENSCAN00000040244, FGENESH00000090525+FGENESH00000090847, ENSXETP00000042175 and ENSXETP00000042174; version 34.1b GENSCAN00000125308+GENSCAN00000125309, ENSXETP00000042174 and ENSXETP00000042175.
2g x.tropicalis fasta domain 6222 fasta plain scaffold_574+, ~0.2Mbp Gap in PTS region in genomic sequence. 98 exons in PTS. Each exon encodes one tandem repeat unit. PTS part has Cys-containing sequence. Ensembl reference: version 37.4 GENSCAN00000040204, FGENESH00000090818, ENSXETP00000042206 and ENSXETP00000042205; version 34.1b GENSCAN00000125313, ENSXETP00000042205 and ENSXETP00000042206.
2h x.tropicalis fasta domain 2104 fasta plain scaffold_574+, ~0.3Mbp 4 exons in PTS. Ensembl reference: version 37.4 GENSCAN00000040238, FGENESH00000090912, ENSXETP00000042219, ENSXETP00000042216, and ENSXETP00000042215; version 34.1b GENSCAN00000125316, ENSXETP00000042215 and ENSXETP00000042242.
2i x.tropicalis fasta domain 1913 fasta plain scaffold_755-, ~0.5Mbp 2 exons in PTS. PTS part has Cys-containing sequence. Ensembl reference: version 37.4 GENSCAN00000026951+GENSCAN00000026937; version 34.1b GENSCAN00000112069+GENSCAN00000112048. 
2j x.tropicalis fasta domain 1702 fasta plain scaffold_896-, <0.1Mbp Similar with Muc2n. Gap in PTS region in genomic sequence. 12 exons in PTS. Each exon encodes one tandem repeat unit. PTS has Cys-containing sequence. Ensemb reference: version 37.4 GENSCAN00000063828, FGENESH00000111600, ENSXETP00000042208, ENSXETP00000013460, ENSXETP00000032566 and ENSXETP00000034727; version 34.1b GENSCAN00000098922, ENSXETP00000021921, ENSXETP00000021927 and ENSXETP00000021920.
2k x.tropicalis fasta domain 651 fasta plain scaffold_896-, ~0.1Mbp One-exon PTS. PTS part has Cys-containing sequence. Ensembl reference: version 37.4 GENSCAN00000063822+GENSCAN00000063825+GENSCAN00000063827, FGENESH00000111688, ENSXETP00000053959, ENSXETP00000040995 and ENSXETP00000053957; version 34.1b GENSCAN00000111898+GENSCAN00000099237+GENSCAN00000099188.
2l x.tropicalis fasta domain 1154 fasta plain scaffold_986-, <0.1Mbp One-exon PTS. PTS part has Cys-containing sequence. Ensembl reference: version 37.4 GENSCAN00000009791, FGENESH00000020673, ENSXETP00000013455, and ENSXETP00000021896; version 34.1b: GENSCAN00000086187.
2m x.tropicalis fasta domain 2524 fasta plain scaffold_986-, ~0.1Mbp 24 exons in PTS. Each exon encodes one tandem repeat unit. PTS part has Cys-containing sequence. Ensembl reference: version 37.4 GENSCAN00000009788+GENSCAN00000009795, FGENESH00000020709, ENSXETP00000032570, ENSXETP00000021920, ENSXETP00000013453, ENSXETP00000021909, ENSXETP00000013452, ENSXETP00000021895 and ENSXETP00000055084; version 34.1b GENSCAN00000086199+GENSCAN00000086190, ENSXETP00000013454, ENSXETP00000013455, ENSXETP00000013452 and ENSXETP00000013456. 
2n x.tropicalis fasta domain 1822 fasta plain scaffold_1006-, <0.1Mbp Similar with Muc2j. Gap in PTS region in genomic sequence. 13 exons in PTS. Almost each exon encodes one tandem repeat unit. PTS part has Cys-containing sequence. Ensembl reference: version 37.4 GENSCAN00000057142, FGENESH00000104295, ENSXETP00000021899 and ENSXETP00000032569; version 34.1b GENSCAN00000098704, ENSXETP00000021899 and ENSXETP00000021896.
2o x.tropicalis fasta domain 2079 fasta plain scaffold_1333-, <0.1Mbp Gap in PTS region in genomic sequence. 18 exons in PTS. One or two exons encode one tandem repeat unit. PTS part has Cys-containing sequence. Ensembl reference: version 37.4 GENSCAN00000077648, FGENESH00000122823 and ENSXETP00000032501; version 34.1b GENSCAN00000086206.
2p x.tropicalis fasta domain 661 fasta plain scaffold_1426-, <0.1Mbp Gap in the beginning of PTS region in genomic sequence. More than 3 exons in PTS. Each exon encode one tandem repeat unit. PTS part has Cys-containing sequence. Ensembl reference: version 37.4 GENSCAN00000069933, FGENESH00000115773, ENSXETP00000032632, ENSXETP00000032625 and ENSXETP00000021893; version 34.1b GENSCAN00000112160.
3a x.tropicalis fasta domain 520 fasta plain scaffold_749-, ~0.4Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000071031 and FGENESH00000115757; version 34.1b GENSCAN00000118441.
3b x.tropicalis fasta domain 965 fasta plain scaffold_749-, ~0.3Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000071036 and FGENESH00000115802; version 34.1b GENSCAN00000118401.
3c x.tropicalis fasta domain 954 fasta plain scaffold_749-, ~0.2Mbp 4 exons in PTS. Ensembl reference: version 37.4 GENSCAN00000071050, FGENESH00000115776+FGENESH00000115917 and ENSXETP00000037175; version 34.1b GENSCAN00000118391, GENSCAN00000118375 and ENSXETP00000037175.
3d x.tropicalis fasta domain 2187 fasta plain scaffold_1618-, <0.1Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000053715 and FGENESH00000104115; version 34.1b GENSCAN00000118328.
3e x.tropicalis fasta domain 636 fasta plain scaffold_1779+, <0.1Mbp 4 exons in PTS. Ensembl reference: version 37.4 GENSCAN00000000455 and FGENESH00000023409; version 34.1b GENSCAN00000137950 and ENSXETP00000044637.
3f x.tropicalis fasta domain 450 fasta plain scaffold_1991-, <0.1Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000029382, FGENESH00000082889 and ENSXETP00000056730; version 34.1b GENSCAN00000091783.
3g x.tropicalis fasta domain 1139 fasta plain scaffold_734+, <0.1Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000027493, FGENESH00000080527, ENSXETP00000033733, ENSXETP00000033734, ENSXETP00000033736 and ENSXETP00000033738; version 34.1b GENSCAN00000114078 and ENSXETP00000033733.
4a x.tropicalis fasta domain 3408 fasta plain scaffold_81+, ~3.0Mbp Gap in PTS region in genomic sequence. 15 exons in PTS. Ensembl reference: version 37.4 GENSCAN00000012203, ENSXETP00000006674 and ENSXETP00000006654; version 34.1b GENSCAN00000076562, ENSXETP00000006674, ENSXETP00000006654 and ENSXETP00000006663.
4b x.tropicalis fasta domain 1171 fasta plain scaffold_81-, ~3.1Mbp Gap in the beginning of PTS region in genomic sequence. One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000012236, FGENESH00000021630, ENSXETP00000006622 and ENSXETP00000006637; version 34.1b ENSXETP00000006622, ENSXETP00000006637 and ENSXETP00000006630.
4c x.tropicalis fasta domain 2589 fasta plain scaffold_81+, ~2.8Mbp 4 exons in PTS1 and 2 exons in PTS2. Ensembl reference: version 37.4 GENSCAN00000012199 and FGENESH00000021870; version 34.1b GENSCAN00000076759.
5a x.tropicalis fasta domain 3868 fasta plain scaffold_183+, ~1.1Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000075002, FGENESH000000118063, ENSXETP00000041135, ENSXETP00000041133, ENSXETP00000041136, ENSXETP00000041137, ENSXETP00000041140, ENSXETP00000041141, ENSXETP00000041142, ENSXETP00000041149 and ENSXETP00000041154; version 34.1b GENSCAN00000138112, ENSXETP00000041135, ENSXETP00000041133, ENSXETP00000041136, ENSXETP00000041137 and ENSXETP00000041140.
5b x.tropicalis fasta domain 2915 fasta plain scaffold_183+, ~1.2Mbp 2 exons in PTS. Ensembl reference: version 37.4 GENSCAN00000074965, FGENESH000000117679 and ENSXETP00000041136; version 34.1b GENSCAN00000138114, ENSXETP00000041148 and ENSXETP00000041149. 
5c x.tropicalis fasta domain 2163 fasta plain scaffold_183-, ~1.6Mbp 2 exons in PTS. Ensembl reference: version 37.4 GENSCAN00000017557, FGENESH000000025641, ENSXETP00000034619, ENSXETP00000034615, ENSXETP00000054672, ENSXETP00000054671, ENSXETP00000041148, ENSXETP00000034641, ENSXETP00000034646, ENSXETP00000034631, ENSXETP00000034638 and ENSXETP00000034650; version 34.1b GENSCAN00000113462, ENSXETP00000034638, ENSXETP00000034641, ENSXETP00000034615, ENSXETP00000034619 and ENSXETP00000034631. 
5d x.tropicalis fasta domain 2647 fasta plain scaffold_183-, ~1.8Mbp 2 exons in PTS. Ensembl reference: version 37.4 GENSCAN00000017546 and FGENESH000000025778+FGENESH000000025598; version 34.1b GENSCAN00000113473 and ENSXETP00000034713.
5e x.tropicalis fasta domain 4711 fasta plain scaffold_216+, ~0.1Mbp PTS has tandem repeats. 3 exons in PTS. Ensembl reference: version 37.4 GENSCAN00000074730, FGENESH00000119485, ENSXETP00000022817, ENSXETP00000022818 and ENSXETP00000022821; version 34.1b GENSCAN00000098713, ENSXETP00000022818, ENSXETP00000022819, ENSXETP00000022821 and ENSXETP00000022817.
5f x.tropicalis fasta domain 1355 fasta plain scaffold_216-, <0.1Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000074743, FGENESH00000119260, ENSXETP00000022812, ENSXETP00000022814, ENSXETP00000054465 and ENSXETP00000054466; version 34.1b GENSCAN00000098657, ENSXETP00000022814, ENSXETP00000022815 and ENSXETP00000022812.
5g x.tropicalis fasta domain 1151 fasta plain scaffold_574-, ~0.6Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000040214, FGENESH00000090637, ENSXETP00000042255 and ENSXETP00000042257.
5h x.tropicalis fasta domain 2264 fasta plain scaffold_574-, ~0.7Mbp 8 exons in PTS. Ensembl reference: version 37.4 GENSCAN00000040219+GENSCAN00000040200, FGENESH00000090566+ FGENESH00000090608 and ENSXETP00000042268; version 34.1b GENSCAN00000125331 and GENSCAN00000125330.
5i x.tropicalis fasta domain 1410 fasta plain scaffold_183+, ~1.0Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000074993 and FGENESH000000117567; version 34.1b GENSCAN00000138110, ENSXETP00000041126 and ENSXETP00000041094.
6 x.tropicalis fasta domain 2446 fasta plain scaffold_183-, ~0.7Mbp 7 exons in PTS. Ensembl reference: version 37.4 GENSCAN00000075003, FGENESH000000117968, ENSXETP00000040980 and ENSXETP00000040918; version 34.1b GENSCAN00000138105, ENSXETP00000040980 and ENSXETP00000040918.
16 x.tropicalis fasta domain 1583 fasta plain scaffold_386-, ~1.1Mbp Gap in PTS region in genomic sequence. Sequence error in SEA3. 7 exons in PTS. Each exon encodes one tandem repeat unit in latter PTS. Ensembl reference: version 37.4 GENSCAN00000003633 and FGENESH00000006509; version 34.1b GENSCAN00000096667.
MucMS1 x.tropicalis fasta domain 1548 fasta plain scaffold_1150-, ~0.1Mbp One-exon PTS for all the 3 PTS domains. Ensembl reference: version 37.4 GENSCAN00000074100 and FGENESH00000120685; version 34.1b GENSCAN00000120331 and ENSXETP00000041608.
MucMS2 x.tropicalis fasta domain 1782 fasta plain scaffold_919-, ~0.2Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000016924 and FGENESH00000025346; version 34.1b GENSCAN00000120310.
MucMS3 x.tropicalis fasta domain 1559 fasta plain scaffold_919-, ~0.1Mbp One-exon PTS. Ensembl reference: version 37.4 GENSCAN00000016914, FGENESH00000025423+FGENESH00000025301; version 34.1b GENSCAN00000120299.
EXPLANATION OF ANNOTATION