Mucin Species   Protein Length   Main Domain Exon Structure   mRNA   DNA   Note                                
1? chicken   fasta domain >622   PTS-SEA   fasta   Chr1+, ~102.9Mbp fasta   Only weak evidence of Muc1 relationship. Incomplete, no SS, no TM. PTS is encoded by 5 exons. Ensembl reference: Version 27.1d GENSCAN00000001713.                                
2 chicken   fasta domain >3167   D1-D2-D3-PTS(CysD)-D4   fasta   Chr5-, ~12.4Mbp fasta   Might be lacking part of PTS due to gap in genomic sequence. Ensembl reference: Version 27.1d GENSCAN000000007965 and GENSCAN00000004619; Version 35.1k GENSCAN00000074371.                                
4 chicken   fasta domain 2417   PTS-NIDO-AMOP-VWD   fasta   Chr9+, ~143.3Mbp fasta   Ensembl reference: Version 27.1d GENSCAN00000012104.                                
5AC chicken   fasta domain >2288   D1-D2-D3-PTS(CysD)-D4   fasta   Chr5-, ~12.3Mbp fasta   Lack signal sequence and is incomplete in PTS due to gap in genomic sequence. Ensembl reference: Version 27.1d GENSCAN0000074140; Version 31.5k GENSCAN00000071261.                                
5B chicken   fasta domain ~2064   D1-D2-D3-PTS(CysD)   fasta   Chr5-, ~12.2Mbp     No VWD4 domain in protein. Hypothetica sequence between signal sequence and first VWD. Ensembl reference: Version 27.1d GENSCAN00000071259; Version 31.5k GENSCAN00000071260.                                
6 chicken   fasta domain >1343   D1-D2-D3-PTS   fasta   Chr5+, ~12.5Mbp fasta   Missing C-terminal end of PTS due to gap in genomic sequence. Ensembl reference: Version 27.1d GENSCAN00000072932; Version V31.5k GENSCAN00000056472.                                
13 chicken   fasta domain 627   PTS-SEA   fasta   Chr7-, ~28.6Mbp fasta   Maybe lacking PTS exons due to gap in genomic sequence. Ensembl reference: Version 27.1d ENSCALP00000019244, GENSCAN00000013254.                                
16 chicken   fasta domain >734   PTS-SEA1-SEA2-SEA3-SEA4   fasta   Chr28+, 1.6Mbp fasta   Maybe lacking part of PTS and additional SEA domains due to gap in genomic sequence before latter PTS and after 4 SEAs. Ensembl reference: Version 27.1d ENSGALP00000002153, GENSCAN00000063245.                                
ovo chicken   fasta domain 2108   D1-D2-D3-D4   fasta   Chr5-, ~12.4Mbp     Same as NCBI: BAB21488 (mRNA: AB046524).                                
EXPLANATION OF ANNOTATION