Mucin |
Species |
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Protein |
Length |
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Main Domain Exon Structure |
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mRNA |
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DNA |
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Note |
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1? |
chicken |
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fasta |
domain |
>622 |
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PTS-SEA |
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fasta |
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Chr1+, ~102.9Mbp |
fasta |
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Only weak evidence of Muc1 relationship. Incomplete, no SS, no
TM. PTS is encoded by 5 exons. Ensembl reference: Version 27.1d
GENSCAN00000001713. |
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2 |
chicken |
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fasta |
domain |
>3167 |
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D1-D2-D3-PTS(CysD)-D4 |
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fasta |
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Chr5-, ~12.4Mbp |
fasta |
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Might be lacking part of PTS due to gap in genomic sequence.
Ensembl reference: Version 27.1d GENSCAN000000007965 and GENSCAN00000004619;
Version 35.1k GENSCAN00000074371. |
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4 |
chicken |
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fasta |
domain |
2417 |
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PTS-NIDO-AMOP-VWD |
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fasta |
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Chr9+, ~143.3Mbp |
fasta |
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Ensembl reference: Version 27.1d GENSCAN00000012104. |
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5AC |
chicken |
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fasta |
domain |
>2288 |
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D1-D2-D3-PTS(CysD)-D4 |
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fasta |
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Chr5-, ~12.3Mbp |
fasta |
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Lack signal sequence and is incomplete in PTS due to gap in
genomic sequence. Ensembl reference: Version 27.1d GENSCAN0000074140; Version
31.5k GENSCAN00000071261. |
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5B |
chicken |
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fasta |
domain |
~2064 |
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D1-D2-D3-PTS(CysD) |
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fasta |
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Chr5-, ~12.2Mbp |
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No VWD4 domain in protein. Hypothetica sequence between signal
sequence and first VWD. Ensembl reference: Version 27.1d GENSCAN00000071259;
Version 31.5k GENSCAN00000071260. |
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6 |
chicken |
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fasta |
domain |
>1343 |
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D1-D2-D3-PTS |
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fasta |
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Chr5+, ~12.5Mbp |
fasta |
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Missing C-terminal end of PTS due to gap in genomic sequence.
Ensembl reference: Version 27.1d GENSCAN00000072932; Version V31.5k
GENSCAN00000056472. |
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13 |
chicken |
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fasta |
domain |
627 |
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PTS-SEA |
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fasta |
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Chr7-, ~28.6Mbp |
fasta |
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Maybe lacking PTS exons due to gap in genomic sequence.
Ensembl reference: Version 27.1d ENSCALP00000019244, GENSCAN00000013254. |
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16 |
chicken |
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fasta |
domain |
>734 |
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PTS-SEA1-SEA2-SEA3-SEA4 |
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fasta |
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Chr28+, 1.6Mbp |
fasta |
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Maybe lacking part of PTS and additional SEA domains due to
gap in genomic sequence before latter PTS and after 4 SEAs. Ensembl
reference: Version 27.1d ENSGALP00000002153, GENSCAN00000063245. |
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ovo |
chicken |
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fasta |
domain |
2108 |
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D1-D2-D3-D4 |
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fasta |
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Chr5-, ~12.4Mbp |
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Same as NCBI: BAB21488 (mRNA: AB046524). |
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EXPLANATION OF ANNOTATION |
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