Mucin Species Protein Sequence Length mRNA Sequence DNA Sequence Note
ciMucMV1 ciona intestinalis fasta domain >1334 scaffold_609+, <0.1Mbp (v39.195b) Lost PTS in version 40.2b. Ensembl reference: version 39.195b GENSCAN00000085991.
ciMucMV2 ciona intestinalis fasta domain 1098 fasta plain scaffold_220-, ~0.1Mbp (v40.2b) Two exons in PTS. Gap in 3rd VWD in genomic sequence. Ensembl reference: version 40.2b GENSCAN00000088682.
ciMucMV3 ciona intestinalis fasta domain 1469 scaffold_223-, <0.1Mbp (v39.195b) Lost PTS and 3rd VWD in version 40.2b. Ensembl_reference: version 39.195b ENSCINP00000001406.
ciMucMV4 ciona intestinalis fasta domain 1275 scaffold_16+, ~0.2Mbp (v39.195b) Lost 1st VWD in version 40.2b.  Ensembl_reference: version 39.195b ENSCINP00000016240.
ciMucMV5 ciona intestinalis fasta domain 3425 fasta plain chr10q-, ~3.4Mbp (v40.2b) One-exon PTS. Ensembl reference: version 40.2b GENSCAN00000090826.
ciMucMV6 ciona intestinalis fasta domain 1769 fasta plain scaffold_26-, ~0.3Mbp (v40.2b) One-exon PTS. PTS is small. Ensembl reference: version 40.2b GENSCAN00000077236.
ciMuc4 ciona intestinalis fasta domain 2643 fasta plain chr6q-, ~2.2Mbp (v40.2b) Eight exons in PTS. Ensembl reference: version 40.2b GENSCAN00000100929.
ciMucMS ciona intestinalis fasta domain 5109 scaffold_88-, ~0.1Mbp (v39.195b) Lost SEA, VWD and TM in version 40.2b. 31 EGF domains. Ensembl reference: version 39.195b GENSCAN00000010060.
EXPLANATION OF ANNOTATION